STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC52295.1Lipoprotein-releasing system permease protein. (375 aa)    
Predicted Functional Partners:
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.994
SMC59603.1
Putative ABC transport system ATP-binding protein.
  
 0.971
SMD16498.1
Putative ABC transport system ATP-binding protein.
  
 0.960
SMC98404.1
Chaperone LolA.
 
 
 
 0.950
SMD04668.1
Lipoprotein-releasing system permease protein.
  
  
 
0.934
SMD07056.1
Beta-barrel assembly machine subunit BamA.
 
   
 0.690
SMC74321.1
Hypothetical protein.
  
     0.679
SMC52282.1
Uncharacterized conserved protein YbbC, DUF1343 family.
       0.649
SMC52269.1
Hypothetical protein.
       0.618
SMC90148.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.586
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.