STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC62012.1Uncharacterized membrane protein. (720 aa)    
Predicted Functional Partners:
SMC62001.1
Hypothetical protein.
 
     0.956
SMC61979.1
Protein of unknown function.
 
     0.955
SMC61925.1
Planctomycete cytochrome C.
 
    
0.871
SMD02983.1
Carbohydrate binding module (family 6).
 
     0.772
SMD00248.1
Planctomycete cytochrome C.
 
     0.770
SMD00240.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.764
SMD02987.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.756
SMD11749.1
Hypothetical protein.
  
     0.717
SMC87307.1
Hypothetical protein.
  
     0.712
SMC62021.1
TIGR02453 family protein.
       0.678
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.