STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC70736.1Magnesium chelatase subunit I. (492 aa)    
Predicted Functional Partners:
SMC60163.1
Ca-activated chloride channel family protein.
  
 0.974
SMC60173.1
Ca-activated chloride channel family protein.
  
 0.974
SMC97029.1
N-terminal double-transmembrane domain-containing protein.
  
 0.974
SMC70727.1
Von Willebrand factor type A domain-containing protein.
 
    0.934
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.923
SMC91448.1
Putative membrane protein.
     
 0.908
SMC70744.1
Hypothetical protein.
       0.740
SMC70794.1
UbiA prenyltransferase family protein.
       0.707
SMD14184.1
Methyltransferase domain-containing protein.
  
 
 0.587
SMC58690.1
DNA-binding transcriptional regulator, MarR family.
  
     0.572
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.