STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC71680.1Uncharacterized membrane protein YckC, RDD family. (247 aa)    
Predicted Functional Partners:
SMC71670.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
    0.925
SMC71611.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.921
SMC71642.1
Hypothetical protein.
 
     0.905
SMC71650.1
Protein of unknown function.
 
     0.905
SMC71660.1
Hypothetical protein.
 
     0.883
SMC71623.1
MoxR-like ATPase.
 
    0.673
SMC53772.1
Uncharacterized membrane protein YckC, RDD family.
  
     0.612
SMD06676.1
Heat shock protein Hsp15.
  
    0.478
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.