STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC73654.1Serine/threonine-protein kinase HipA. (419 aa)    
Predicted Functional Partners:
SMC73666.1
Helix-turn-helix domain-containing protein.
 
 
 0.973
SMC70380.1
Helix-turn-helix domain-containing protein.
   
 
 0.956
SMC56588.1
Fic family protein.
 
     0.543
SMC73674.1
Hypothetical protein.
       0.499
SMC87214.1
Serine/threonine-protein kinase HipA.
  
     0.499
SMC57825.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.486
SMC73737.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
 
 0.476
SMC78430.1
Helix-turn-helix domain-containing protein.
  
 
 0.476
SMD01356.1
Hypothetical protein.
  
 
 0.476
SMD00704.1
Helix-turn-helix.
  
 
 0.476
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.