Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC59029.1 | SMC80366.1 | SAMN04488101_101532 | SAMN04488101_103144 | Cystathionine beta-synthase. | Aspartate kinase. | 0.945 |
SMC59029.1 | SMC80414.1 | SAMN04488101_101532 | SAMN04488101_103149 | Cystathionine beta-synthase. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.954 |
SMC59029.1 | SMC87196.1 | SAMN04488101_101532 | SAMN04488101_104124 | Cystathionine beta-synthase. | Cystathionine gamma-lyase. | 0.995 |
SMC59029.1 | SMD00899.1 | SAMN04488101_101532 | SAMN04488101_108103 | Cystathionine beta-synthase. | Cystathionine gamma-synthase. | 0.993 |
SMC59029.1 | SMD00907.1 | SAMN04488101_101532 | SAMN04488101_108105 | Cystathionine beta-synthase. | O-acetylhomoserine sulfhydrylase. | 0.927 |
SMC59029.1 | SMD00924.1 | SAMN04488101_101532 | SAMN04488101_108107 | Cystathionine beta-synthase. | Homoserine dehydrogenase. | 0.911 |
SMC59029.1 | ahcY | SAMN04488101_101532 | SAMN04488101_103269 | Cystathionine beta-synthase. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.945 |
SMC59029.1 | ilvA | SAMN04488101_101532 | SAMN04488101_105199 | Cystathionine beta-synthase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.930 |
SMC59029.1 | metE | SAMN04488101_101532 | SAMN04488101_11527 | Cystathionine beta-synthase. | Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. | 0.934 |
SMC59029.1 | metZ | SAMN04488101_101532 | SAMN04488101_101523 | Cystathionine beta-synthase. | O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.991 |
SMC80366.1 | SMC59029.1 | SAMN04488101_103144 | SAMN04488101_101532 | Aspartate kinase. | Cystathionine beta-synthase. | 0.945 |
SMC80366.1 | SMC80414.1 | SAMN04488101_103144 | SAMN04488101_103149 | Aspartate kinase. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.983 |
SMC80366.1 | SMC87196.1 | SAMN04488101_103144 | SAMN04488101_104124 | Aspartate kinase. | Cystathionine gamma-lyase. | 0.959 |
SMC80366.1 | SMD00899.1 | SAMN04488101_103144 | SAMN04488101_108103 | Aspartate kinase. | Cystathionine gamma-synthase. | 0.959 |
SMC80366.1 | SMD00907.1 | SAMN04488101_103144 | SAMN04488101_108105 | Aspartate kinase. | O-acetylhomoserine sulfhydrylase. | 0.812 |
SMC80366.1 | SMD00924.1 | SAMN04488101_103144 | SAMN04488101_108107 | Aspartate kinase. | Homoserine dehydrogenase. | 0.953 |
SMC80366.1 | ahcY | SAMN04488101_103144 | SAMN04488101_103269 | Aspartate kinase. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.902 |
SMC80366.1 | ilvA | SAMN04488101_103144 | SAMN04488101_105199 | Aspartate kinase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.898 |
SMC80366.1 | metE | SAMN04488101_103144 | SAMN04488101_11527 | Aspartate kinase. | Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. | 0.962 |
SMC80366.1 | metZ | SAMN04488101_103144 | SAMN04488101_101523 | Aspartate kinase. | O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.942 |
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