STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC98772.1Hypothetical protein. (330 aa)    
Predicted Functional Partners:
SMC98778.1
Hypothetical protein.
 
    0.865
SMC98758.1
Tetratricopeptide repeat-containing protein.
 
  
 0.847
SMC98785.1
Tetratricopeptide repeat-containing protein.
 
     0.789
SMC74761.1
OmpA family protein.
  
     0.762
SMC98764.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.760
SMD03316.1
Heparinase II/III-like protein.
  
   
 0.678
SMC91296.1
Dipeptidyl peptidase IV (DPP IV) N-terminal region.
 
 
 0.670
SMD18148.1
Gliding motility-associated C-terminal domain-containing protein.
  
    0.652
SMD13255.1
Hypothetical protein.
  
    0.626
SMC53909.1
Heparin/heparan-sulfate lyase.
  
    0.594
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.