STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC97498.1Protein involved in gliding motility GldG. (559 aa)    
Predicted Functional Partners:
SMC97506.1
Protein involved in gliding motility GldF.
  
 0.996
SMD04661.1
Gliding motility-associated lipoprotein GldD.
  
   
 0.806
SMD05138.1
Gliding motility-associated lipoprotein GldJ.
  
   
 0.802
SMC70007.1
Gliding motility-associated lipoprotein GldB.
  
   
 0.801
SMC97491.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
     0.784
SMC82536.1
Hypothetical protein.
  
     0.743
SMC73883.1
Gliding motility-associated lipoprotein GldH.
  
   
 0.731
SMC54429.1
Protein of unknown function.
  
     0.717
SMC70216.1
Tetratricopeptide repeat-containing protein.
  
   
 0.705
SMC97522.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.704
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.