STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD00765.1Imidazolonepropionase. (1077 aa)    
Predicted Functional Partners:
SMC58071.1
Histidine ammonia-lyase.
  
  
 0.831
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.813
SMC58666.1
Hypothetical protein.
  
 
 0.813
SMC94617.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.719
SMD00762.1
ATP-dependent DNA helicase RecQ.
       0.680
SMD00757.1
Putative auto-transporter adhesin, head GIN domain.
       0.610
SMD00749.1
L-lactate dehydrogenase complex protein LldE.
  
   0.599
SMD00754.1
MFS transporter, UMF1 family.
       0.599
SMC67937.1
Signal transduction histidine kinase.
  
 
 0.567
mqnB
Futalosine hydrolase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2).
  
 
  0.567
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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