STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD03870.1alpha-L-fucosidase. (622 aa)    
Predicted Functional Partners:
SMC92125.1
Alpha-L-fucosidase.
  
     0.766
SMC87136.1
alpha-L-fucosidase.
  
  
 
0.609
SMD11365.1
alpha-L-fucosidase.
  
  
 
0.594
SMD10010.1
alpha-L-fucosidase.
 
  
 
0.591
SMD04948.1
alpha-L-fucosidase.
 
  
 
0.584
SMD16655.1
alpha-L-fucosidase.
 
  
 
0.578
SMD03862.1
Hypothetical protein.
    
  0.571
SMD03857.1
Starch-binding associating with outer membrane.
  
    0.552
SMC87293.1
alpha-L-fucosidase 2.
  
  
  0.543
SMD03851.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.537
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.