STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD07431.1Peroxiredoxin. (375 aa)    
Predicted Functional Partners:
SMC60906.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.760
SMD07426.1
Thioredoxin-like.
       0.746
SMC88127.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.712
SMD07420.1
PKD-like family protein.
       0.518
SMD07436.1
OmpA-OmpF porin, OOP family.
       0.510
SMD07412.1
Protein of unknown function.
       0.493
SMD00431.1
Thioredoxin.
  
     0.466
SMC80414.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.462
SMD07401.1
SusD family protein.
       0.444
SMD07389.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.433
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.