STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD07486.1Thiol-disulfide isomerase or thioredoxin. (453 aa)    
Predicted Functional Partners:
SMD13576.1
Peptide-methionine (R)-S-oxide reductase.
   
 0.944
SMD10124.1
Protein of unknown function.
   
 0.810
SMD07488.1
Hypothetical protein.
       0.773
SMD11275.1
Peroxiredoxin.
  
     0.767
SMC80476.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.763
SMD07480.1
Peroxiredoxin.
 
    
0.742
SMC74921.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 0.699
SMC87158.1
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin).
  
 0.699
SMC62841.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
    
  0.698
SMC81517.1
Dihydrolipoamide dehydrogenase.
   
 0.687
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.