Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMD10283.1TonB-linked outer membrane protein, SusC/RagA family. (1175 aa)    
Predicted Functional Partners:
SMD10278.1
SusD family protein.
 
     0.931
SMD15384.1
SusD family protein.
  
     0.772
SMD13402.1
SusD family protein.
  
     0.771
SMC66494.1
SusD family protein.
  
     0.769
SMC58390.1
SusD family protein.
  
     0.767
SMC70689.1
SusD family protein.
  
     0.767
SMC57972.1
SusD family protein.
  
     0.765
SMC87354.1
SusD family protein.
  
     0.754
SMC70601.1
SusD family protein.
  
     0.747
SMD11634.1
Starch-binding associating with outer membrane.
  
     0.741
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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