STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD10298.1Predicted dehydrogenase. (327 aa)    
Predicted Functional Partners:
SMC72417.1
Predicted dehydrogenase.
  
  
  0.859
SMD16666.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
   
 
 0.783
SMD10296.1
Hypothetical protein.
       0.773
SMD03592.1
Predicted dehydrogenase.
  
  
  0.613
SMD11493.1
Predicted dehydrogenase.
  
  
  0.588
SMD10293.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.524
SMD16712.1
Predicted dehydrogenase.
  
  
  0.501
SMD04092.1
Predicted dehydrogenase.
  
  
  0.497
SMD04076.1
Tat (twin-arginine translocation) pathway signal sequence.
  
  
  0.494
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.474
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.