STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD12572.1Uncharacterized protein YjiK. (293 aa)    
Predicted Functional Partners:
SMD12568.1
HD domain-containing protein.
 
     0.895
SMD12580.1
Surface antigen.
 
     0.879
SMD12576.1
Hypothetical protein.
 
     0.826
SMD12563.1
Hypothetical protein.
       0.601
SMD12554.1
Cytochrome oxidase maturation protein, cbb3-type.
       0.498
SMD12560.1
Cu+-exporting ATPase.
       0.498
SMC90461.1
Family of unknown function.
  
     0.458
SMC97430.1
Conserved hypothetical protein (putative transposase or invertase).
  
     0.450
SMD14020.1
Hypothetical protein.
  
     0.421
SMD13430.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.