STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD16186.1DNA-binding beta-propeller fold protein YncE. (765 aa)    
Predicted Functional Partners:
SMD16195.1
Quinoprotein glucose dehydrogenase.
    
 0.749
SMD16184.1
IPT/TIG domain-containing protein.
 
    
0.713
SMD16180.1
Starch-binding associating with outer membrane.
       0.693
SMD16177.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.687
SMD16188.1
Hypothetical protein.
 
    
0.600
SMD16191.1
Hexosaminidase.
       0.510
SMC89576.1
Putative heme-binding domain-containing protein.
 
  
  0.508
SMD08568.1
Calcineurin-like phosphoesterase.
  
     0.477
SMC73642.1
Putative membrane-bound dehydrogenase domain-containing protein.
    
 0.439
SMC52143.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
    
 0.431
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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