STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD17014.1Phytanoyl-CoA dioxygenase (PhyH). (296 aa)    
Predicted Functional Partners:
SMC80860.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.663
SMC87206.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.663
SMD03090.1
FAD/FMN-containing dehydrogenase.
   
 
 0.484
SMD11165.1
D-lactate dehydrogenase.
   
 
 0.484
SMD17018.1
Starch-binding associating with outer membrane.
       0.473
SMD17022.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.444
SMC94665.1
Amino acid adenylation domain-containing protein.
  
  
 0.437
SMD17009.1
Hypothetical protein.
       0.418
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.