STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD17428.1Helix-turn-helix domain-containing protein. (109 aa)    
Predicted Functional Partners:
SMD17432.1
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase.
       0.715
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.681
SMD17435.1
Ribosomal protein L11 methyltransferase.
       0.680
SMD17494.1
Hypothetical protein.
  
     0.663
SMD17441.1
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase.
    
  0.662
SMC66585.1
Putative porin.
  
     0.611
SMD05314.1
Hypothetical protein.
  
     0.607
SMC91413.1
Hypothetical protein.
  
     0.606
SMD00951.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.586
SMC91557.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.573
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.