Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC91461.1DNA polymerase IV. (349 aa)    
Predicted Functional Partners:
APC90742.1
DNA polymerase III beta subunit.
   
 0.957
APC90828.1
RecA protein.
  
 0.953
APC92029.1
DNA polymerase III alpha subunit.
  
 
 0.919
APC90789.1
DNA repair helicase rad25.
  
 0.903
APC91479.1
DNA polymerase III epsilon subunit.
  
 
 0.781
APC92295.1
DNA polymerase I.
  
 0.761
APC90887.1
DNA polymerase III delta subunit.
    
 0.760
APC91985.1
Cell division protein FtsW.
  
 
 0.748
APC91976.1
DNA polymerase III delta prime subunit.
  
 
 0.743
APC92090.1
DNA topoisomerase I.
  
 
 0.619
Your Current Organism:
Francisella sp. MA067296
NCBI taxonomy Id: 475375
Other names: F. sp. MA067296
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