Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC91845.1RNA polymerase sigma factor RpoH. (292 aa)    
Predicted Functional Partners:
APC92267.1
DNA-directed RNA polymerase beta subunit.
 
 0.985
APC91259.1
DNA-directed RNA polymerase omega subunit.
 
 
 0.982
APC92266.1
DNA-directed RNA polymerase beta' subunit.
 
 0.972
APC90982.1
DNA-directed RNA polymerase alpha subunit.
 
 0.947
APC91127.1
DNA-directed RNA polymerase alpha subunit.
 
 0.938
APC91240.1
Chaperone protein DnaJ.
  
 
 0.918
APC91239.1
Chaperone protein DnaK.
  
 
 0.890
APC91515.1
RNA polymerase sigma factor RpoD.
  
  
0.880
APC92239.1
Heat shock protein 60 family chaperone GroEL.
  
 
 0.837
APC91648.1
Transcriptional Regulator, Crp/Fnr family.
   
 
 0.791
Your Current Organism:
Francisella sp. MA067296
NCBI taxonomy Id: 475375
Other names: F. sp. MA067296
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