Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JN10_2289 | JN10_2290 | GCA_001663155_00965 | GCA_001663155_00966 | Unannotated protein. | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | 0.987 |
JN10_2289 | JN10_2291 | GCA_001663155_00965 | GCA_001663155_00967 | Unannotated protein. | Unannotated protein. | 0.988 |
JN10_2289 | JN10_2292 | GCA_001663155_00965 | GCA_001663155_00968 | Unannotated protein. | Unannotated protein. | 0.988 |
JN10_2289 | JN10_2296 | GCA_001663155_00965 | GCA_001663155_00972 | Unannotated protein. | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | 0.859 |
JN10_2289 | JN10_2297 | GCA_001663155_00965 | GCA_001663155_00973 | Unannotated protein. | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | 0.860 |
JN10_2289 | JN10_2298 | GCA_001663155_00965 | GCA_001663155_00974 | Unannotated protein. | Unannotated protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor. | 0.846 |
JN10_2289 | JN10_2303 | GCA_001663155_00965 | GCA_001663155_00979 | Unannotated protein. | Unannotated protein. | 0.942 |
JN10_2289 | JN10_2306 | GCA_001663155_00965 | GCA_001663155_00982 | Unannotated protein. | Unannotated protein. | 0.947 |
JN10_2289 | bchL | GCA_001663155_00965 | GCA_001663155_00986 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.698 |
JN10_2289 | bchN | GCA_001663155_00965 | GCA_001663155_00983 | Unannotated protein. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.789 |
JN10_2290 | JN10_2289 | GCA_001663155_00966 | GCA_001663155_00965 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein. | 0.987 |
JN10_2290 | JN10_2291 | GCA_001663155_00966 | GCA_001663155_00967 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein. | 0.991 |
JN10_2290 | JN10_2292 | GCA_001663155_00966 | GCA_001663155_00968 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein. | 0.994 |
JN10_2290 | JN10_2296 | GCA_001663155_00966 | GCA_001663155_00972 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | 0.940 |
JN10_2290 | JN10_2297 | GCA_001663155_00966 | GCA_001663155_00973 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. | 0.926 |
JN10_2290 | JN10_2298 | GCA_001663155_00966 | GCA_001663155_00974 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor. | 0.835 |
JN10_2290 | JN10_2303 | GCA_001663155_00966 | GCA_001663155_00979 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein. | 0.951 |
JN10_2290 | JN10_2306 | GCA_001663155_00966 | GCA_001663155_00982 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein. | 0.969 |
JN10_2290 | bchL | GCA_001663155_00966 | GCA_001663155_00986 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.767 |
JN10_2290 | bchN | GCA_001663155_00966 | GCA_001663155_00983 | Unannotated protein; Belongs to the NifH/BchL/ChlL family. | Unannotated protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.944 |
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