Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JN10_0463 | JN10_1816 | GCA_001663155_00281 | GCA_001663155_01540 | Unannotated protein. | Unannotated protein. | 0.662 |
JN10_0463 | murD | GCA_001663155_00281 | GCA_001663155_02231 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.483 |
JN10_0463 | murE | GCA_001663155_00281 | GCA_001663155_02234 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.482 |
JN10_1816 | JN10_0463 | GCA_001663155_01540 | GCA_001663155_00281 | Unannotated protein. | Unannotated protein. | 0.662 |
JN10_1816 | JN10_1900 | GCA_001663155_01540 | GCA_001663155_01456 | Unannotated protein. | Unannotated protein. | 0.676 |
JN10_1816 | ftsA | GCA_001663155_01540 | GCA_001663155_02224 | Unannotated protein. | Unannotated protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.747 |
JN10_1816 | ftsQ | GCA_001663155_01540 | GCA_001663155_02225 | Unannotated protein. | Unannotated protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.748 |
JN10_1816 | mraY | GCA_001663155_01540 | GCA_001663155_02232 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.662 |
JN10_1816 | murC | GCA_001663155_01540 | GCA_001663155_02228 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the MurCDEF family. | 0.676 |
JN10_1816 | murD | GCA_001663155_01540 | GCA_001663155_02231 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.752 |
JN10_1816 | murE | GCA_001663155_01540 | GCA_001663155_02234 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.685 |
JN10_1816 | murF | GCA_001663155_01540 | GCA_001663155_02233 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.735 |
JN10_1816 | murG | GCA_001663155_01540 | GCA_001663155_02229 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.690 |
JN10_1900 | JN10_1816 | GCA_001663155_01456 | GCA_001663155_01540 | Unannotated protein. | Unannotated protein. | 0.676 |
JN10_1900 | ftsA | GCA_001663155_01456 | GCA_001663155_02224 | Unannotated protein. | Unannotated protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.598 |
JN10_1900 | ftsQ | GCA_001663155_01456 | GCA_001663155_02225 | Unannotated protein. | Unannotated protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.743 |
JN10_1900 | mraY | GCA_001663155_01456 | GCA_001663155_02232 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.879 |
JN10_1900 | murC | GCA_001663155_01456 | GCA_001663155_02228 | Unannotated protein. | Unannotated protein; Cell wall formation; Belongs to the MurCDEF family. | 0.630 |
JN10_1900 | murD | GCA_001663155_01456 | GCA_001663155_02231 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.949 |
JN10_1900 | murE | GCA_001663155_01456 | GCA_001663155_02234 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.845 |
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