argA protein (Ishikawaella capsulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

argA

N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. (461 aa)

Predicted Functional Partners:

argB

0.997

argC

0.993

argG

0.981

argH

0.952

argI

0.927

aspC

0.922

thrA

0.711

dapB

0.708

hisB

0.698

tyrA

0.696

Your Current Organism:

Ishikawaella capsulata

NCBI taxonomy Id: 476281
Other names: C. Ishikawaella capsulata Mpkobe, Candidatus Ishikawaella capsulata Mpkobe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argA	argB	ICMP_133	ICMP_026	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	0.997
argA	argC	ICMP_133	ICMP_025	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.993
argA	argG	ICMP_133	ICMP_027	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.981
argA	argH	ICMP_133	ICMP_028	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Argininosuccinate lyase.	0.952
argA	argI	ICMP_133	ICMP_300	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Ornithine carbamoyltransferase 1; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.927
argA	aspC	ICMP_133	ICMP_593	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Aspartate aminotransferase.	0.922
argA	dapB	ICMP_133	ICMP_317	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.	0.708
argA	hisB	ICMP_133	ICMP_465	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Imidazole glycerol-phosphate dehydratase/histidinol phosphatase; In the N-terminal section; belongs to the histidinol- phosphatase family.	0.698
argA	thrA	ICMP_133	ICMP_307	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Bifunctional aspartokinase I/homeserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.	0.711
argA	tyrA	ICMP_133	ICMP_544	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	Fused chorismate mutase T/prephenate dehydrogenase.	0.696
argB	argA	ICMP_026	ICMP_133	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	0.997
argB	argC	ICMP_026	ICMP_025	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.999
argB	argG	ICMP_026	ICMP_027	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.993
argB	argH	ICMP_026	ICMP_028	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	Argininosuccinate lyase.	0.992
argB	argI	ICMP_026	ICMP_300	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	Ornithine carbamoyltransferase 1; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.891
argB	thrA	ICMP_026	ICMP_307	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	Bifunctional aspartokinase I/homeserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.	0.607
argC	argA	ICMP_025	ICMP_133	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	0.993
argC	argB	ICMP_025	ICMP_026	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate.	0.999
argC	argG	ICMP_025	ICMP_027	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.990
argC	argH	ICMP_025	ICMP_028	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	Argininosuccinate lyase.	0.988