STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCCell wall structural complex MreBCD; Involved in formation and maintenance of cell shape. (297 aa)    
Predicted Functional Partners:
mreB
Cell wall structural complex MreBCD, actin-like component MreB.
 
 
 0.981
mreD
Cell wall structural complex MreBCD; Transmembrane component MreD.
  
 
 0.956
mrdA
Transpeptidase; Penicillin-binding protein 2.
 
 
 0.839
minC
Septum formation inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.826
minD
Membrane ATPase of the MinC-MinD-MinE system.
  
    0.718
ftsI
Transpeptidase; Involved in septal peptidoglycan synthesis.
 
 
 0.662
mrdB
Cell wall shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.605
amiB
N-acetylmuramoyl-l-alanine amidase II.
  
  
 0.486
ftsW
Integral membrane protein; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
 
  
 0.451
cmk
Cytidylate kinase.
  
    0.435
Your Current Organism:
Ishikawaella capsulata
NCBI taxonomy Id: 476281
Other names: C. Ishikawaella capsulata Mpkobe, Candidatus Ishikawaella capsulata Mpkobe
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