Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tsgAHypothetical protein. (393 aa)    
Predicted Functional Partners:
nlpB
Lipoprotein.
  
     0.774
yqjE
Conserved inner membrane protein.
  
     0.774
ftsN
Essential cell division protein.
  
    0.774
pgpB
Phosphatidylglycerophosphatase B.
  
     0.759
ftsL
Membrane bound cell division protein at septum containing leucine zipper motif.
  
     0.755
yqjD
Hypothetical protein.
  
     0.744
elaB
Hypothetical protein.
  
     0.740
yccV
DNA-binding protein.
  
     0.720
ydjM
Predicted inner membrane protein regulated by LexA.
  
     0.715
yheL
Predicted intracellular sulfur oxidation protein tusB; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.
 
     0.712
Your Current Organism:
Ishikawaella capsulata
NCBI taxonomy Id: 476281
Other names: C. Ishikawaella capsulata Mpkobe, Candidatus Ishikawaella capsulata Mpkobe
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