rsxE protein (Ishikawaella capsulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rsxE

Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family. (224 aa)

Predicted Functional Partners:

rsxC

0.998

rsxD

0.998

rsxA

0.994

rsxB

0.987

nth

0.967

nuoI

0.822

yfjF

0.765

ICMP_433

0.732

nuoA

0.474

atpC

0.469

Your Current Organism:

Ishikawaella capsulata

NCBI taxonomy Id: 476281
Other names: C. Ishikawaella capsulata Mpkobe, Candidatus Ishikawaella capsulata Mpkobe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ICMP_433	nth	ICMP_433	ICMP_435	Hypothetical protein.	DNA glycosylase and apyrimidinic (AP) lyase.	0.435
ICMP_433	rsxA	ICMP_433	ICMP_429	Hypothetical protein.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.631
ICMP_433	rsxB	ICMP_433	ICMP_430	Hypothetical protein.	Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.631
ICMP_433	rsxC	ICMP_433	ICMP_431	Hypothetical protein.	Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.714
ICMP_433	rsxD	ICMP_433	ICMP_432	Hypothetical protein.	Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.773
ICMP_433	rsxE	ICMP_433	ICMP_434	Hypothetical protein.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.732
atpC	nuoA	ICMP_009	ICMP_048	F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH:ubiquinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.	0.533
atpC	nuoI	ICMP_009	ICMP_055	F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH:ubiquinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.831
atpC	rsxA	ICMP_009	ICMP_429	F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.426
atpC	rsxE	ICMP_009	ICMP_434	F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.469
nth	ICMP_433	ICMP_435	ICMP_433	DNA glycosylase and apyrimidinic (AP) lyase.	Hypothetical protein.	0.435
nth	rsxA	ICMP_435	ICMP_429	DNA glycosylase and apyrimidinic (AP) lyase.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.548
nth	rsxB	ICMP_435	ICMP_430	DNA glycosylase and apyrimidinic (AP) lyase.	Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.672
nth	rsxC	ICMP_435	ICMP_431	DNA glycosylase and apyrimidinic (AP) lyase.	Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.650
nth	rsxD	ICMP_435	ICMP_432	DNA glycosylase and apyrimidinic (AP) lyase.	Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.673
nth	rsxE	ICMP_435	ICMP_434	DNA glycosylase and apyrimidinic (AP) lyase.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.967
nuoA	atpC	ICMP_048	ICMP_009	NADH:ubiquinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.	F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.533
nuoA	nuoI	ICMP_048	ICMP_055	NADH:ubiquinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.	NADH:ubiquinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.996
nuoA	rsxA	ICMP_048	ICMP_429	NADH:ubiquinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.475
nuoA	rsxE	ICMP_048	ICMP_434	NADH:ubiquinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.	Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.	0.474