STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nthDNA glycosylase and apyrimidinic (AP) lyase. (147 aa)    
Predicted Functional Partners:
xthA
Exonuclease III.
 
 0.990
rsxE
Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.
 
    0.967
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
 
 0.792
polA
DNA polymerase I.
   
 
 0.695
polA-2
DNA polymerase I.
   
 
 0.695
rsxD
Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
  
    0.673
rsxB
Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
  
 0.672
rsxC
Member of SoxR-reducing complex; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
  
  
 0.650
rsxA
Integral membrane protein of SoxR-reducing complex; Belongs to the NqrDE/RnfAE family.
     
 0.548
tppB
Putative tripeptide transporter permease.
       0.497
Your Current Organism:
Ishikawaella capsulata
NCBI taxonomy Id: 476281
Other names: C. Ishikawaella capsulata Mpkobe, Candidatus Ishikawaella capsulata Mpkobe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.