Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argH | fumC | ICMP_028 | ICMP_428 | Argininosuccinate lyase. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.808 |
argH | sdhA | ICMP_028 | ICMP_487 | Argininosuccinate lyase. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.804 |
argH | sdhB | ICMP_028 | ICMP_486 | Argininosuccinate lyase. | Succinate dehydrogenase FeS subunit. | 0.812 |
argH | sdhC | ICMP_028 | ICMP_489 | Argininosuccinate lyase. | Succinate dehydrogenase cytochrome b556 large membrane subunit. | 0.800 |
argH | sdhD | ICMP_028 | ICMP_488 | Argininosuccinate lyase. | Succinate dehydrogenase cytochrome b556 small membrane subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.800 |
argH | sucA | ICMP_028 | ICMP_485 | Argininosuccinate lyase. | Alpha-ketoglutarate decarboxylase. | 0.800 |
aspC | fumC | ICMP_593 | ICMP_428 | Aspartate aminotransferase. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.864 |
aspC | nuoC | ICMP_593 | ICMP_050 | Aspartate aminotransferase. | NADH:ubiquinone oxidoreductase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.665 |
aspC | sdhA | ICMP_593 | ICMP_487 | Aspartate aminotransferase. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.847 |
aspC | sdhB | ICMP_593 | ICMP_486 | Aspartate aminotransferase. | Succinate dehydrogenase FeS subunit. | 0.853 |
aspC | sdhC | ICMP_593 | ICMP_489 | Aspartate aminotransferase. | Succinate dehydrogenase cytochrome b556 large membrane subunit. | 0.842 |
aspC | sdhD | ICMP_593 | ICMP_488 | Aspartate aminotransferase. | Succinate dehydrogenase cytochrome b556 small membrane subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.804 |
aspC | sucA | ICMP_593 | ICMP_485 | Aspartate aminotransferase. | Alpha-ketoglutarate decarboxylase. | 0.824 |
fumC | argH | ICMP_428 | ICMP_028 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Argininosuccinate lyase. | 0.808 |
fumC | aspC | ICMP_428 | ICMP_593 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Aspartate aminotransferase. | 0.864 |
fumC | nuoC | ICMP_428 | ICMP_050 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | NADH:ubiquinone oxidoreductase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.788 |
fumC | sdhA | ICMP_428 | ICMP_487 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.995 |
fumC | sdhB | ICMP_428 | ICMP_486 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Succinate dehydrogenase FeS subunit. | 0.961 |
fumC | sdhC | ICMP_428 | ICMP_489 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Succinate dehydrogenase cytochrome b556 large membrane subunit. | 0.953 |
fumC | sdhD | ICMP_428 | ICMP_488 | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Succinate dehydrogenase cytochrome b556 small membrane subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.911 |
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