STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allCN-carbamoyl-L-amino acid amidohydrolase. (420 aa)    
Predicted Functional Partners:
ICMP_512
Aminotransferase class V.
  
 
  0.981
ICMP_516
Polysaccharide deacetylase xylanase.
    
  0.920
ggt
Gamma-glutamyltranspeptidase periplasmic precursor.
     
 0.608
ICMP_515
Amidase; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A related.
 
   
 0.596
ICMP_514
Hypothetical protein.
       0.514
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
  
  
 0.487
cspE
Cold shock protein E.
       0.450
Your Current Organism:
Ishikawaella capsulata
NCBI taxonomy Id: 476281
Other names: C. Ishikawaella capsulata Mpkobe, Candidatus Ishikawaella capsulata Mpkobe
Server load: medium (42%) [HD]