STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdPutative cysteine desulfurase. (438 aa)    
Predicted Functional Partners:
iscU_1
Iron-sulfur cluster assembly scaffold protein IscU.
  
 0.959
iscU_2
Iron-sulfur cluster assembly scaffold protein IscU.
  
 0.959
sufB
FeS cluster assembly protein SufB.
  
 
 0.818
KLU65469.1
Putative ABC transporter ATP-binding protein.
  
  
 0.797
KLU67814.1
Hypothetical protein.
 
     0.671
trxB_2
Thioredoxin reductase.
  
 
  0.537
trxB_3
Thioredoxin reductase.
  
 
  0.537
trxB_5
Thioredoxin reductase.
  
 
  0.537
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.532
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.532
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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