Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
bioB_1 | dnrC | DEAC_c05420 | DEAC_c04650 | Biotin synthase. | Aklanonic acid methyltransferase DnrC. | 0.436 |
bioB_1 | hndC_1 | DEAC_c05420 | DEAC_c05360 | Biotin synthase. | NADP-reducing hydrogenase subunit HndC. | 0.532 |
bioB_1 | hndC_2 | DEAC_c05420 | DEAC_c08640 | Biotin synthase. | NADP-reducing hydrogenase subunit HndC. | 0.443 |
bioB_1 | hndC_4 | DEAC_c05420 | DEAC_c30960 | Biotin synthase. | NADP-reducing hydrogenase subunit HndC. | 0.443 |
bioB_1 | tam | DEAC_c05420 | DEAC_c39350 | Biotin synthase. | Trans-aconitate 2-methyltransferase. | 0.532 |
dnrC | bioB_1 | DEAC_c04650 | DEAC_c05420 | Aklanonic acid methyltransferase DnrC. | Biotin synthase. | 0.436 |
dnrC | fdx_1 | DEAC_c04650 | DEAC_c04640 | Aklanonic acid methyltransferase DnrC. | Ferredoxin. | 0.452 |
dnrC | hndC_1 | DEAC_c04650 | DEAC_c05360 | Aklanonic acid methyltransferase DnrC. | NADP-reducing hydrogenase subunit HndC. | 0.492 |
dnrC | hndC_2 | DEAC_c04650 | DEAC_c08640 | Aklanonic acid methyltransferase DnrC. | NADP-reducing hydrogenase subunit HndC. | 0.543 |
dnrC | hndC_4 | DEAC_c04650 | DEAC_c30960 | Aklanonic acid methyltransferase DnrC. | NADP-reducing hydrogenase subunit HndC. | 0.543 |
dnrC | mcbR | DEAC_c04650 | DEAC_c04660 | Aklanonic acid methyltransferase DnrC. | HTH-type transcriptional regulator McbR. | 0.405 |
dnrC | metH_1 | DEAC_c04650 | DEAC_c00380 | Aklanonic acid methyltransferase DnrC. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.479 |
dnrC | sfrB_2 | DEAC_c04650 | DEAC_c41350 | Aklanonic acid methyltransferase DnrC. | NADPH-Fe(3+) oxidoreductase subunit beta. | 0.439 |
dnrC | tam | DEAC_c04650 | DEAC_c39350 | Aklanonic acid methyltransferase DnrC. | Trans-aconitate 2-methyltransferase. | 0.466 |
fdx_1 | dnrC | DEAC_c04640 | DEAC_c04650 | Ferredoxin. | Aklanonic acid methyltransferase DnrC. | 0.452 |
fdx_1 | hndC_1 | DEAC_c04640 | DEAC_c05360 | Ferredoxin. | NADP-reducing hydrogenase subunit HndC. | 0.495 |
fdx_1 | hndC_2 | DEAC_c04640 | DEAC_c08640 | Ferredoxin. | NADP-reducing hydrogenase subunit HndC. | 0.494 |
fdx_1 | hndC_4 | DEAC_c04640 | DEAC_c30960 | Ferredoxin. | NADP-reducing hydrogenase subunit HndC. | 0.494 |
fdx_1 | sfrB_2 | DEAC_c04640 | DEAC_c41350 | Ferredoxin. | NADPH-Fe(3+) oxidoreductase subunit beta. | 0.501 |
hndC_1 | bioB_1 | DEAC_c05360 | DEAC_c05420 | NADP-reducing hydrogenase subunit HndC. | Biotin synthase. | 0.532 |
page 1 of 3