Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KLU67577.1 | KLU67579.1 | DEAC_c07920 | DEAC_c07940 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KLU67577.1 | KLU67581.1 | DEAC_c07920 | DEAC_c07960 | Hypothetical protein. | Gas vesicle synthesis protein GvpO. | 0.518 |
KLU67577.1 | gvpA_1 | DEAC_c07920 | DEAC_c07910 | Hypothetical protein. | Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. | 0.559 |
KLU67577.1 | gvpA_2 | DEAC_c07920 | DEAC_c07950 | Hypothetical protein. | Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. | 0.545 |
KLU67577.1 | nirQ | DEAC_c07920 | DEAC_c07930 | Hypothetical protein. | Denitrification regulatory protein NirQ. | 0.773 |
KLU67579.1 | KLU67577.1 | DEAC_c07940 | DEAC_c07920 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KLU67579.1 | KLU67581.1 | DEAC_c07940 | DEAC_c07960 | Hypothetical protein. | Gas vesicle synthesis protein GvpO. | 0.518 |
KLU67579.1 | gvpA_1 | DEAC_c07940 | DEAC_c07910 | Hypothetical protein. | Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. | 0.559 |
KLU67579.1 | gvpA_2 | DEAC_c07940 | DEAC_c07950 | Hypothetical protein. | Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. | 0.545 |
KLU67579.1 | nirQ | DEAC_c07940 | DEAC_c07930 | Hypothetical protein. | Denitrification regulatory protein NirQ. | 0.773 |
KLU67581.1 | KLU67577.1 | DEAC_c07960 | DEAC_c07920 | Gas vesicle synthesis protein GvpO. | Hypothetical protein. | 0.518 |
KLU67581.1 | KLU67579.1 | DEAC_c07960 | DEAC_c07940 | Gas vesicle synthesis protein GvpO. | Hypothetical protein. | 0.518 |
KLU67581.1 | KLU67582.1 | DEAC_c07960 | DEAC_c07970 | Gas vesicle synthesis protein GvpO. | Gas vesicle synthesis protein GvpL/GvpF. | 0.511 |
KLU67581.1 | KLU67584.1 | DEAC_c07960 | DEAC_c07990 | Gas vesicle synthesis protein GvpO. | Gas vesicle synthesis protein GvpL/GvpF. | 0.439 |
KLU67581.1 | KLU67587.1 | DEAC_c07960 | DEAC_c08020 | Gas vesicle synthesis protein GvpO. | Gas vesicle protein K. | 0.439 |
KLU67581.1 | gvpA_2 | DEAC_c07960 | DEAC_c07950 | Gas vesicle synthesis protein GvpO. | Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. | 0.732 |
KLU67581.1 | gvpA_4 | DEAC_c07960 | DEAC_c08030 | Gas vesicle synthesis protein GvpO. | Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. | 0.409 |
KLU67581.1 | nirQ | DEAC_c07960 | DEAC_c07930 | Gas vesicle synthesis protein GvpO. | Denitrification regulatory protein NirQ. | 0.531 |
KLU67582.1 | KLU67581.1 | DEAC_c07970 | DEAC_c07960 | Gas vesicle synthesis protein GvpL/GvpF. | Gas vesicle synthesis protein GvpO. | 0.511 |
KLU67582.1 | KLU67584.1 | DEAC_c07970 | DEAC_c07990 | Gas vesicle synthesis protein GvpL/GvpF. | Gas vesicle synthesis protein GvpL/GvpF. | 0.926 |
page 1 of 5