STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dxs_21-deoxy-D-xylulose-5-phosphate synthase. (313 aa)    
Predicted Functional Partners:
tktA
Transketolase 1.
 0.999
tktB
Transketolase 2.
 0.997
tkt
Transketolase.
 0.997
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.881
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.825
rpiB
Ribose-5-phosphate isomerase B.
  
 
 0.813
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.784
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.784
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.784
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
  0.710
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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