STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdA4-hydroxyphenylacetate decarboxylase activating enzyme; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM). (326 aa)    
Predicted Functional Partners:
bssA_1
Benzylsuccinate synthase alpha subunit; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
  
 0.994
bssA_2
Benzylsuccinate synthase alpha subunit.
  
 0.964
adhE_1
Aldehyde-alcohol dehydrogenase.
 
  
 0.807
cobP
Bifunctional adenosylcobalamin biosynthesis protein CobP.
   
    0.794
KLU66551.1
BMC domain protein.
 
     0.683
pduU
Propanediol utilization protein PduU.
       0.663
pduV
Propanediol utilization protein PduV; Belongs to the EutP/PduV family.
       0.663
adhE_2
Aldehyde-alcohol dehydrogenase.
 
  
 0.648
KLU66549.1
Hypothetical protein.
 
     0.629
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.616
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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