STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepM_2Murein DD-endopeptidase MepM. (238 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
   
   0.860
ftsK
DNA translocase FtsK.
  
  
 0.774
yocH_2
Cell wall-binding protein YocH precursor.
 
  
 0.767
yocH_3
Cell wall-binding protein YocH precursor.
 
  
 0.757
KLU66788.1
Hypothetical protein.
       0.757
KLU66789.1
Hypothetical protein.
       0.757
KLU66786.1
Hypothetical protein.
       0.741
iap_1
Putative endopeptidase p60 precursor.
  
 
 0.736
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.732
yocH_1
Cell wall-binding protein YocH precursor.
  
  
 0.724
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.