STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lycAutolytic lysozyme. (160 aa)    
Predicted Functional Partners:
pgdS_2
gamma-DL-glutamyl hydrolase precursor.
 
    
0.761
mepS_2
Murein DD-endopeptidase MepS/murein LD-carboxypeptidase precursor.
 
    
0.708
lytC_15
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
 0.655
lytE_1
Putative peptidoglycan endopeptidase LytE precursor.
 
      0.556
mepS_1
Murein DD-endopeptidase MepS/murein LD-carboxypeptidase precursor.
    
 0.500
argR
Arginine repressor; Regulates arginine biosynthesis genes.
  
     0.444
lytC_5
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
 0.417
lytC_3
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
  0.412
apu
Amylopullulanase precursor.
    
  0.412
cbhB
Exoglucanase B precursor.
    
  0.412
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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