Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aspS | csoR_3 | DEAC_c18550 | DEAC_c18540 | aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Copper-sensing transcriptional repressor CsoR. | 0.538 |
aspS | hisS | DEAC_c18550 | DEAC_c18560 | aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | histidine--tRNA ligase. | 0.989 |
aspS | trxA_2 | DEAC_c18550 | DEAC_c18530 | aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Thioredoxin-1; Belongs to the thioredoxin family. | 0.622 |
copA | csoR_3 | DEAC_c00320 | DEAC_c18540 | Copper-exporting P-type ATPase A. | Copper-sensing transcriptional repressor CsoR. | 0.704 |
copA | merP | DEAC_c00320 | DEAC_c00310 | Copper-exporting P-type ATPase A. | Mercuric transport protein periplasmic component precursor. | 0.965 |
copA | ziaA | DEAC_c00320 | DEAC_c39090 | Copper-exporting P-type ATPase A. | Zinc-transporting ATPase. | 0.927 |
csoR_3 | aspS | DEAC_c18540 | DEAC_c18550 | Copper-sensing transcriptional repressor CsoR. | aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.538 |
csoR_3 | copA | DEAC_c18540 | DEAC_c00320 | Copper-sensing transcriptional repressor CsoR. | Copper-exporting P-type ATPase A. | 0.704 |
csoR_3 | fliA | DEAC_c18540 | DEAC_c30010 | Copper-sensing transcriptional repressor CsoR. | RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family. | 0.433 |
csoR_3 | fliN | DEAC_c18540 | DEAC_c30150 | Copper-sensing transcriptional repressor CsoR. | Flagellar motor switch protein FliN. | 0.574 |
csoR_3 | hisS | DEAC_c18540 | DEAC_c18560 | Copper-sensing transcriptional repressor CsoR. | histidine--tRNA ligase. | 0.538 |
csoR_3 | merP | DEAC_c18540 | DEAC_c00310 | Copper-sensing transcriptional repressor CsoR. | Mercuric transport protein periplasmic component precursor. | 0.604 |
csoR_3 | sigI_1 | DEAC_c18540 | DEAC_c00250 | Copper-sensing transcriptional repressor CsoR. | RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily. | 0.433 |
csoR_3 | sigI_2 | DEAC_c18540 | DEAC_c00740 | Copper-sensing transcriptional repressor CsoR. | RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily. | 0.433 |
csoR_3 | trxA_2 | DEAC_c18540 | DEAC_c18530 | Copper-sensing transcriptional repressor CsoR. | Thioredoxin-1; Belongs to the thioredoxin family. | 0.707 |
csoR_3 | ziaA | DEAC_c18540 | DEAC_c39090 | Copper-sensing transcriptional repressor CsoR. | Zinc-transporting ATPase. | 0.430 |
fliA | csoR_3 | DEAC_c30010 | DEAC_c18540 | RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family. | Copper-sensing transcriptional repressor CsoR. | 0.433 |
fliA | fliN | DEAC_c30010 | DEAC_c30150 | RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family. | Flagellar motor switch protein FliN. | 0.958 |
fliN | csoR_3 | DEAC_c30150 | DEAC_c18540 | Flagellar motor switch protein FliN. | Copper-sensing transcriptional repressor CsoR. | 0.574 |
fliN | fliA | DEAC_c30150 | DEAC_c30010 | Flagellar motor switch protein FliN. | RNA polymerase sigma factor FliA; Belongs to the sigma-70 factor family. | 0.958 |
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