STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding protein A. (467 aa)    
Predicted Functional Partners:
ftsW_3
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.998
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.985
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.957
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.949
fhaB
FHA domain-containing protein FhaB.
 
   
 0.943
prkC
Serine/threonine-protein kinase PrkC.
    
 0.928
stp_3
Serine/threonine phosphatase stp.
  
 0.906
ftsQ
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.897
garA
Glycogen accumulation regulator GarA.
 
   
 0.891
ponA_1
Penicillin-binding protein 1A/1B.
 
 
 0.833
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.