STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sleB_3Spore cortex-lytic enzyme precursor. (221 aa)    
Predicted Functional Partners:
ypeB
Sporulation protein YpeB.
 
  
 0.827
KLU67146.1
Stage II sporulation protein R (spore_II_R).
 
   
 0.706
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
 0.656
sleB_1
Spore cortex-lytic enzyme precursor.
 
   
 0.655
lytC_15
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
 0.648
ytfJ
Putative spore protein YtfJ.
  
  
 0.637
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
  
 0.618
KLU66218.1
SpoVA protein.
  
  
 0.608
ylbJ
Sporulation integral membrane protein YlbJ.
  
   
 0.583
spoIIID
Stage III sporulation protein D.
  
  
 0.580
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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