STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yifKPutative transport protein YifK. (464 aa)    
Predicted Functional Partners:
tdcB
L-threonine dehydratase catabolic TdcB.
       0.773
yabJ
2-iminobutanoate/2-iminopropanoate deaminase.
       0.731
adiC
Arginine/agmatine antiporter.
  
   
 0.554
KLU64163.1
YheO-like PAS domain protein.
 
     0.548
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
     
 0.530
KLU66926.1
Hypothetical protein.
  
     0.420
KLU66925.1
Hypothetical protein.
  
     0.417
cstA
Carbon starvation protein A.
  
     0.402
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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