STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
int-TnTransposase from transposon Tn916; Belongs to the 'phage' integrase family. (406 aa)    
Predicted Functional Partners:
lexA_3
LexA repressor.
 
  
 0.809
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.571
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
  0.571
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.568
xerC_5
Tyrosine recombinase XerC.
  
     0.543
xerD_2
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
  
 0.516
whiA
Sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
    0.490
KLU64055.1
Helix-turn-helix domain protein.
       0.463
spo0C_1
Chromosome-partitioning protein Spo0J; Belongs to the ParB family.
  
  
 0.461
prs_1
Ribose-phosphate pyrophosphokinase.
   
    0.456
Your Current Organism:
Desulfosporosinus acididurans
NCBI taxonomy Id: 476652
Other names: D. acididurans, DSM 27692, Desulfosporosinus acididurans Sanchez-Andrea et al. 2015, Desulfosporosinus sp. D, Desulfosporosinus sp. E, Desulfosporosinus sp. M1, JCM 19471, strain M1
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