Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KLU63918.1 | zraR_9 | DEAC_c41470 | DEAC_c41460 | Hypothetical protein. | Transcriptional regulatory protein ZraR. | 0.768 |
arcB | barA_2 | DEAC_c12530 | DEAC_c19830 | Aerobic respiration control sensor protein ArcB. | Signal transduction histidine-protein kinase BarA. | 0.998 |
arcB | bvgS | DEAC_c12530 | DEAC_c12520 | Aerobic respiration control sensor protein ArcB. | Virulence sensor protein BvgS precursor. | 0.997 |
arcB | degS_3 | DEAC_c12530 | DEAC_c33570 | Aerobic respiration control sensor protein ArcB. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.996 |
arcB | kinA_10 | DEAC_c12530 | DEAC_c41050 | Aerobic respiration control sensor protein ArcB. | Sporulation kinase A. | 0.997 |
arcB | kinA_9 | DEAC_c12530 | DEAC_c33730 | Aerobic respiration control sensor protein ArcB. | Sporulation kinase A. | 0.983 |
arcB | rpfC | DEAC_c12530 | DEAC_c12540 | Aerobic respiration control sensor protein ArcB. | Sensory/regulatory protein RpfC. | 0.998 |
arcB | rpoN | DEAC_c12530 | DEAC_c09430 | Aerobic respiration control sensor protein ArcB. | RNA polymerase sigma-54 factor. | 0.733 |
arcB | zraR_2 | DEAC_c12530 | DEAC_c06110 | Aerobic respiration control sensor protein ArcB. | Transcriptional regulatory protein ZraR. | 0.779 |
arcB | zraR_9 | DEAC_c12530 | DEAC_c41460 | Aerobic respiration control sensor protein ArcB. | Transcriptional regulatory protein ZraR. | 0.603 |
barA_2 | arcB | DEAC_c19830 | DEAC_c12530 | Signal transduction histidine-protein kinase BarA. | Aerobic respiration control sensor protein ArcB. | 0.998 |
barA_2 | bvgS | DEAC_c19830 | DEAC_c12520 | Signal transduction histidine-protein kinase BarA. | Virulence sensor protein BvgS precursor. | 0.998 |
barA_2 | degS_3 | DEAC_c19830 | DEAC_c33570 | Signal transduction histidine-protein kinase BarA. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.985 |
barA_2 | kinA_10 | DEAC_c19830 | DEAC_c41050 | Signal transduction histidine-protein kinase BarA. | Sporulation kinase A. | 0.997 |
barA_2 | kinA_9 | DEAC_c19830 | DEAC_c33730 | Signal transduction histidine-protein kinase BarA. | Sporulation kinase A. | 0.948 |
barA_2 | rpfC | DEAC_c19830 | DEAC_c12540 | Signal transduction histidine-protein kinase BarA. | Sensory/regulatory protein RpfC. | 0.998 |
barA_2 | rpoN | DEAC_c19830 | DEAC_c09430 | Signal transduction histidine-protein kinase BarA. | RNA polymerase sigma-54 factor. | 0.537 |
barA_2 | zraR_2 | DEAC_c19830 | DEAC_c06110 | Signal transduction histidine-protein kinase BarA. | Transcriptional regulatory protein ZraR. | 0.849 |
barA_2 | zraR_9 | DEAC_c19830 | DEAC_c41460 | Signal transduction histidine-protein kinase BarA. | Transcriptional regulatory protein ZraR. | 0.638 |
bvgS | arcB | DEAC_c12520 | DEAC_c12530 | Virulence sensor protein BvgS precursor. | Aerobic respiration control sensor protein ArcB. | 0.997 |
page 1 of 5