Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KLU63798.1 | mdtH_3 | DEAC_c42900 | DEAC_c42910 | Hypothetical protein. | Multidrug resistance protein MdtH. | 0.443 |
KLU66399.1 | mdtH_3 | DEAC_c17980 | DEAC_c42910 | Hypothetical protein. | Multidrug resistance protein MdtH. | 0.407 |
kinE_4 | mdtH_3 | DEAC_c42920 | DEAC_c42910 | Sporulation kinase E. | Multidrug resistance protein MdtH. | 0.447 |
mdtH_3 | KLU63798.1 | DEAC_c42910 | DEAC_c42900 | Multidrug resistance protein MdtH. | Hypothetical protein. | 0.443 |
mdtH_3 | KLU66399.1 | DEAC_c42910 | DEAC_c17980 | Multidrug resistance protein MdtH. | Hypothetical protein. | 0.407 |
mdtH_3 | kinE_4 | DEAC_c42910 | DEAC_c42920 | Multidrug resistance protein MdtH. | Sporulation kinase E. | 0.447 |
mdtH_3 | metH_1 | DEAC_c42910 | DEAC_c00380 | Multidrug resistance protein MdtH. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.423 |
mdtH_3 | pabB | DEAC_c42910 | DEAC_c03310 | Multidrug resistance protein MdtH. | Aminodeoxychorismate synthase component 1. | 0.464 |
metH_1 | mdtH_3 | DEAC_c00380 | DEAC_c42910 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Multidrug resistance protein MdtH. | 0.423 |
pabB | mdtH_3 | DEAC_c03310 | DEAC_c42910 | Aminodeoxychorismate synthase component 1. | Multidrug resistance protein MdtH. | 0.464 |