STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yheS_1ABC transporter ATP-binding protein. (651 aa)    
Predicted Functional Partners:
pepO
Endothelin-converting enzyme. Metallo peptidase. MEROPS family M13.
       0.795
purH_1
Putative bifunctional purine biosynthesis protein.
  
    0.745
mreB
Putative rod-shape determining protein.
       0.698
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
    0.669
mreD
Rod shape-determining protein MreD.
  
    0.662
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
    0.655
ftsI
Penicillin-binding protein 2.
       0.641
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
 
   0.625
rplD
Putative 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
   
 
 0.607
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.600
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.