Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | rplI | ERS852494_01107 | ERS852494_03336 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.940 |
| def | rplS | ERS852494_01107 | ERS852494_04085 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative 50S ribosomal protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.939 |
| def | rplT | ERS852494_01107 | ERS852494_01102 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.968 |
| def | rplU | ERS852494_01107 | ERS852494_02984 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.954 |
| def | rplX | ERS852494_01107 | ERS852494_04201 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.945 |
| def | rpmI | ERS852494_01107 | ERS852494_01103 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.939 |
| def | rpsP | ERS852494_01107 | ERS852494_01238 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.938 |
| def | rpsT | ERS852494_01107 | ERS852494_00481 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.936 |
| def | rpsU | ERS852494_01107 | ERS852494_04168 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.932 |
| def | tig | ERS852494_01107 | ERS852494_02604 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | FKBP-type peptidylprolyl isomerase. | 0.935 |
| rplI | def | ERS852494_03336 | ERS852494_01107 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.940 |
| rplI | rplS | ERS852494_03336 | ERS852494_04085 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Putative 50S ribosomal protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.991 |
| rplI | rplT | ERS852494_03336 | ERS852494_01102 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Putative 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
| rplI | rplU | ERS852494_03336 | ERS852494_02984 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Putative 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
| rplI | rplX | ERS852494_03336 | ERS852494_04201 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.987 |
| rplI | rpmI | ERS852494_03336 | ERS852494_01103 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Putative 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.968 |
| rplI | rpsP | ERS852494_03336 | ERS852494_01238 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
| rplI | rpsT | ERS852494_03336 | ERS852494_00481 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.958 |
| rplI | rpsU | ERS852494_03336 | ERS852494_04168 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.963 |
| rplI | tig | ERS852494_03336 | ERS852494_02604 | 50S ribosomal protein L9; Binds to the 23S rRNA. | FKBP-type peptidylprolyl isomerase. | 0.915 |
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