STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP02586.1Toprim domain-containing protein. (358 aa)    
Predicted Functional Partners:
CUP02550.1
Protein of uncharacterised function (DUF3853).
 
     0.935
CUP02616.1
Putative transposon-related/mobilisation protein.
 
     0.834
CUP02450.1
Phage integrase family; Belongs to the 'phage' integrase family.
 
    0.821
CUO99741.1
Protein of uncharacterised function (DUF3853).
 
     0.757
CUO56297.1
Protein of uncharacterised function (DUF3853).
 
     0.742
CUO99676.1
Tyrosine type site-specific recombinase; Belongs to the 'phage' integrase family.
 
    0.737
CUO99857.1
Mobilization protein.
 
     0.697
CUP69077.1
Conjugative transposon protein TraO.
 
     0.692
CUP36228.1
Integrase.
 
    0.643
CUO80203.1
Transposase.
 
  
 0.619
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.