STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP36841.1Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase. (856 aa)    
Predicted Functional Partners:
CUP36750.1
Alpha-rhamnosidase.
 
     0.757
rhaB_1
Rhamnulose kinase/L-fuculose kinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
  
 0.639
rhaB_2
L-fuculose kinase.
 
  
 0.632
CUP36892.1
Uncharacterised protein.
       0.615
CUP61231.1
Glycosylhydrolase.
 
  
 0.531
CUO50770.1
Putative exported alpha-L-fucosidase protein.
  
     0.513
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
  
 0.513
exo-4
Putative exported hexosaminidase.
  
   0.482
CUP85334.1
Alpha-L-fucosidase.
  
     0.465
lacZ_12
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.460
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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