STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP38441.1Integrase. (168 aa)    
Predicted Functional Partners:
CUO56369.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.747
CUO87416.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.697
CUP99676.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.656
CUO98609.1
Putative bacteriophage intragrase; Belongs to the 'phage' integrase family.
  
     0.631
CUQ13753.1
Protein of uncharacterised function (DUF3575).
  
     0.617
CUP40704.1
Transposase; Belongs to the 'phage' integrase family.
  
     0.609
CUO67828.1
Protein of uncharacterised function (DUF3575).
  
     0.599
CUP42887.1
DNA binding domain-containing protein.
 
   
 0.589
xerD_2
Integrase; Belongs to the 'phage' integrase family.
 
 
 
 0.586
xerD_1
Integrase; Belongs to the 'phage' integrase family.
 
 
 
 0.583
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.