STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP39829.1Domain of uncharacterised function (DUF3332). (122 aa)    
Predicted Functional Partners:
CUP39755.1
Phospholipase D/transphosphatidylase.
 
     0.583
CUP13170.1
Uncharacterised protein.
  
     0.523
CUP82626.1
ATP-dependent DNA helicase.
  
     0.500
CUP39796.1
Sel1 repeat.
       0.492
CUP38151.1
Uncharacterised protein.
  
     0.477
CUP47847.1
Uncharacterised protein.
  
     0.459
CUP39875.1
Phage/plasmid primase%2C P4 family%2C C-terminal domain.
       0.442
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.