STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP42306.1RNA polymerase ECF-type sigma factor. (350 aa)    
Predicted Functional Partners:
sigM_5
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.843
CUP42340.1
Uncharacterised protein.
       0.827
CUO72973.1
Uncharacterised protein.
  
  
 0.777
CUP27622.1
Uncharacterised protein.
  
   0.776
CUO68729.1
Putative lipoprotein.
  
     0.769
CUO96815.1
Lipoprotein.
  
    0.768
CUP48925.1
Putative transmembrane protein.
  
    0.768
CUP63682.1
TonB-dependent receptor.
  
    0.767
CUP18870.1
Putative lipoprotein.
  
     0.764
CUP75008.1
Uncharacterised protein.
  
     0.763
Your Current Organism:
Bacteroides caccae
NCBI taxonomy Id: 47678
Other names: ATCC 43185, B. caccae, CCUG 38735, CIP 104201, DSM 19024, JCM 9498, NCTC 13051, VPI 3452A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.